PIPages
Labs

Jonathan Chen

Stanford University, CA·Medicine & Clinical Research

Doctors usually choose an antibiotic before lab tests confirm which drug will work. Each such guess can either fuel antibiotic resistance, by using a broad-spectrum drug when a narrower one would do, or leave a patient undertreated.

Fields

Medicine & Clinical Research

Computer Science

Public Health & Epidemiology

Topics

antibiotic resistance

antimicrobial resistance

antibiotic stewardship

Grants
1 known grant, through Jun 2028

What they work on

  1. Harmonize and share electronic health record data on suspected urinary tract infections across Stanford, UT Southwestern and Harvard to support multi-site model building.
  2. Develop and validate Personalized Antibiogram machine learning models that predict a patient's microbial culture and antibiotic susceptibility results before tests return.
  3. Prospectively validate the antibiogram models by integrating them into the electronic health record in real time, instead of relying only on retrospective evaluation.
  4. Develop automated electronic phenotyping methods to identify UTIs in health records, along with a validated measure of how appropriate and desirable an antibiotic choice was.

More about the research

Resistant infections already cause more than 2.8 million illnesses a year in the US. Urinary tract infections (UTIs) are the most common bacterial infection and account for 25–50% of antibiotic prescriptions. More than 20% of UTI bacteria already resist common antibiotics.

Why it matters

Patients with urinary tract infections could receive an effective antibiotic sooner, with fewer unnecessary broad-spectrum prescriptions. Hospitals and stewardship programs would gain tools to measure whether prescribing is appropriate. Better prescribing could help slow the spread of resistant bacteria and reduce the up to $42 billion a year in avoidable US costs tied to antibiotic misuse.

Known grants

From NIH and NSF research grants. Labs often have other funding we can't see.

Measuring and Predicting Appropriate Antibiotic Use to Combat Resistant Bacteria

NIH · Jul 2023 – Jun 2028

Closest labs

Bradford Becken

University of Nebraska Medical Center, NE·Medicine & Clinical Research

Assess the translation potential of an automated dynamic antibiogram through experiential learning and first-hand interviews across the healthcare industry ecosystem.

Eva Raphael

University of California-San Francisco, CA·Public Health & Epidemiology·Early-career

Identify demographic and neighborhood-level risk factors for community-onset UTIs caused by ESBL-producing E. coli in women, using causal inference methods, compared with other resistant and with antibiotic-susceptible UTIs.

Jennie Kwon

Washington University in St Louis, MO·Medicine & Clinical Research

Identify clinical risk factors for community-associated antibiotic-resistant infections, using a database of patients with urinary tract and bloodstream infections from community and healthcare settings.

The school

Stanford University: 87 labs on PI Pages, $1.6B a year on research, 739 research doctorates a year.

More about Stanford University

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