PIPages
Labs

Craig Martin

University of Massachusetts, MA·Biochemistry

Messenger RNA (mRNA), the molecule that carries a gene's instructions to the cell's protein-making machinery, is often chemically modified at particular positions. These modifications can change over time and help control how genes are used.

Fields

Biochemistry

Chemistry

Biophysics

Topics

mRNA

RNA modifications

epitranscriptomics

Grants
1 known grant, through Apr 2027

What they work on

  1. Develop an enzyme-based fluidics system using co-immobilized flow transcription to incorporate multiple, different modified bases at chosen positions in RNA too long for chemical synthesis.
  2. Use the system to place fluorescent probes for FRET, a light-based distance measurement, at specific RNA sites for studies of RNA structure and dynamics.
  3. Produce RNA with position-specific stable isotopes for NMR spectroscopy, and with modified bases that enable studies of translation and alternative splicing.

More about the research

To study them, researchers need RNA with a chosen modification at an exact spot. Chemical synthesis can make such RNA, but only at very short lengths. Methods that work for longer, gene-length RNA are therefore needed.

Why it matters

Being able to make long RNAs with modifications at exact positions could expand understanding of how base modifications act in specific genes across biology. That knowledge could ultimately inform the design of future RNA therapeutics, such as mRNA-based medicines.

Known grants

From NIH and NSF research grants. Labs often have other funding we can't see.

MFB: Fluidics system for efficient site-specific labeling of RNAs

NIH · Jul 2024 – Apr 2027

Closest labs

Esteban Orellana Vinueza

Dartmouth College, NH·Biochemistry

Determine how chemical modifications alter the structure, dynamics and folding or misfolding of tRNA isodecoders, tRNAs that share an anticodon but differ elsewhere, using spectroscopy and molecular dynamics simulations.

Eric T. Kool

Stanford University, CA·Chemistry

Develop new acylating reagents that attach labels, biotin or crosslinkers at specific sites on native RNAs through the 2'-OH group, the hydroxyl group found on every RNA nucleotide.

Pavla Brachova

Old Dominion University, VA·Biology

Determine how inosine, a chemical modification in the coding region of mRNA, affects translation in oocytes, including whether it causes amino acid substitutions, using proteomics and RNA-sequencing approaches.

The school

University of Massachusetts: 28 labs on PI Pages, $282M a year on research, 337 research doctorates a year.

More about University of Massachusetts

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